ProDy 1.5 Series

1.5.1 (Dec 24, 2013)

Changes:

• PDBBlastRecord become picklable.

1.5 (Dec 23, 2013)

New Features:

• buildDirectInfoMatrix() and calcMeff() are implemented for calculation of direct information from multiple sequence alignments.

• showDirectInfoMatrix() and showSCAMatrix() functions are implemented for displaying coevolutionary data.

• RTB is implemented for Rotations-Translations of Blocks calculations. Optional arguments also permit imANM calculations.

Availability:

• Source is moved from lib/prody to prody.

• Source code will be hosted only at GitHub_.

Improvements:

• DCDFile and parseDCD() support DCD files written by cpptraj.

Testing:

• ProDy test command (prody test) and function prody.test() has been removed for easier maintenance of testing functions. See Testing ProDy for more information on how to test ProDy.