ProDy 1.5 Series =============================================================================== .. contents:: :local: 1.5.1 (Dec 24, 2013) ------------------------------------------------------------------------------- **Changes**: * :class:`PDBBlastRecord` become picklable. 1.5 (Dec 23, 2013) ------------------------------------------------------------------------------- **New Features**: * :func:`.buildDirectInfoMatrix` and :func:`.calcMeff` are implemented for calculation of direct information from multiple sequence alignments. * :func:`.showDirectInfoMatrix` and :func:`.showSCAMatrix` functions are implemented for displaying coevolutionary data. * :class:`.RTB` is implemented for Rotations-Translations of Blocks calculations. Optional arguments also permit *imANM* calculations. **Availability**: * Source is moved from :file:`lib/prody` to :file:`prody`. * Source code will be hosted only at GitHub_. **Improvements**: * :class:`.DCDFile` and :func:`.parseDCD` support DCD files written by :program:`cpptraj`. **Testing**: * ProDy test command (:program:`prody test`) and function :func:`prody.test` has been removed for easier maintenance of testing functions. See :ref:`testing` for more information on how to test ProDy.