Drawing/Plotting Tools

This module defines utility functions for drawing.

class prody.utilities.drawtools.Arrow3D(xs, ys, zs, *args, **kwargs)

This function is implemented by tacaswell on stackoverflow: https://stackoverflow.com/a/29188796.

draw(renderer)

Draw the Artist (and its children) using the given renderer.

This has no effect if the artist is not visible (.Artist.get_visible returns False).

Parameters:

renderer (~matplotlib.backend_bases.RendererBase subclass.)

Notes

This method is overridden in the Artist subclasses.

set(*, agg_filter=<UNSET>, alpha=<UNSET>, animated=<UNSET>, antialiased=<UNSET>, arrowstyle=<UNSET>, capstyle=<UNSET>, clip_box=<UNSET>, clip_on=<UNSET>, clip_path=<UNSET>, color=<UNSET>, connectionstyle=<UNSET>, edgecolor=<UNSET>, facecolor=<UNSET>, fill=<UNSET>, gid=<UNSET>, hatch=<UNSET>, hatch_linewidth=<UNSET>, in_layout=<UNSET>, joinstyle=<UNSET>, label=<UNSET>, linestyle=<UNSET>, linewidth=<UNSET>, mouseover=<UNSET>, mutation_aspect=<UNSET>, mutation_scale=<UNSET>, patchA=<UNSET>, patchB=<UNSET>, path_effects=<UNSET>, picker=<UNSET>, positions=<UNSET>, rasterized=<UNSET>, sketch_params=<UNSET>, snap=<UNSET>, transform=<UNSET>, url=<UNSET>, visible=<UNSET>, zorder=<UNSET>)

Set multiple properties at once.

Supported properties are

Properties:

agg_filter: a filter function, which takes a (m, n, 3) float array and a dpi value, and returns a (m, n, 3) array and two offsets from the bottom left corner of the image alpha: float or None animated: bool antialiased or aa: bool or None arrowstyle: [ ‘-’ | ‘<-’ | ‘->’ | ‘<->’ | ‘<|-' | '-|>’ | ‘<|-|>’ | ‘]-’ | ‘-[’ | ‘]-[’ | ‘|-|’ | ‘]->’ | ‘<-[’ | ‘simple’ | ‘fancy’ | ‘wedge’ ] capstyle: .CapStyle or {‘butt’, ‘projecting’, ‘round’} clip_box: ~matplotlib.transforms.BboxBase or None clip_on: bool clip_path: Patch or (Path, Transform) or None color: :mpltype:`color` connectionstyle: [ ‘arc3’ | ‘angle3’ | ‘angle’ | ‘arc’ | ‘bar’ ] edgecolor or ec: :mpltype:`color` or None facecolor or fc: :mpltype:`color` or None figure: ~matplotlib.figure.Figure or ~matplotlib.figure.SubFigure fill: bool gid: str hatch: {‘/’, ‘\’, ‘|’, ‘-’, ‘+’, ‘x’, ‘o’, ‘O’, ‘.’, ‘*’} hatch_linewidth: unknown in_layout: bool joinstyle: .JoinStyle or {‘miter’, ‘round’, ‘bevel’} label: object linestyle or ls: {‘-’, ‘–’, ‘-.’, ‘:’, ‘’, (offset, on-off-seq), …} linewidth or lw: float or None mouseover: bool mutation_aspect: float mutation_scale: float patchA: .patches.Patch patchB: .patches.Patch path_effects: list of .AbstractPathEffect picker: None or bool or float or callable positions: unknown rasterized: bool sketch_params: (scale: float, length: float, randomness: float) snap: bool or None transform: ~matplotlib.transforms.Transform url: str visible: bool zorder: float

class prody.utilities.drawtools.IndexFormatter(labels)

Function taken from Matplotlib version 3.3.1 as soon to be deprecated.

Format the position x to the nearest i-th label where i = int(x + 0.5). Positions where i < 0 or i > len(list) have no tick labels.

Parameters:

labels – List of labels.

type labels: list

__call__(x, pos=None)

Return the format for tick value x at position pos.

The position is ignored and the value is rounded to the nearest integer, which is used to look up the label.

prody.utilities.drawtools.drawTree(tree, label_func=<class 'str'>, show_confidence=False, orientation='horizontal', inverted=False, branch_labels=None, label_colors=None, *args, **kwargs)

Plot the given tree using matplotlib. This function is adapted from draw() for more versatile usages.