Pfam MSA Fetcher
Pfam MSA download application.
- prody.apps.evol_apps.evol_fetch.evol_fetch(acc, **kwargs)[source]
Fetch MSA files from Pfam.
- Parameters:
acc (str) – Pfam accession or ID
Download Options
- Parameters:
alignment (str) – alignment type, one of
'full','seed','ncbi','metagenomics', default is'full'format (str) – Pfam supported MSA format, one of
'selex','fasta','stockholm', default is'stockholm'order (str) – ordering of sequences, one of
'tree','alphabetical', default is'tree'inserts (str) – letter case for inserts, one of
'upper','lower', default is'upper'gaps (str) – gap character, one of
'dashes','dots','mixed', default is'dashes'timeout (int) – timeout for blocking connection attempts, default is
60
Output Options