Atom Selection

Extract a selection of atoms from a PDB file.

prody.apps.prody_apps.prody_select.prody_select(selstr, *pdbs, **kwargs)

Write selected atoms from a PDB file in PDB format.

Parameters:

• selstr – atom selection string, see Atom Selections

• pdbs – PDB identifier(s) or filename(s)

• output – output filename, default is pdb_selected.pdb

• prefix – prefix for output file, default is PDB filename

• suffix – output filename suffix, default is _selected