MSA File Filter

Refine MSA application.

prody.apps.evol_apps.evol_filter.evol_filter(msa, *word, **kwargs)[source]

Filter an MSA using sequence labels.

Parameters:

  • msa – MSA filename to be filtered

  • word – word to be compared to sequence label

Filtering Method (Required)

Parameters:

  • startswith (bool) – sequence label starts with given words

  • endswith (bool) – sequence label ends with given words

  • contains (bool) – sequence label contains with given words

Filter Option

Parameters:

filter_full (bool) – compare full label with word(s)

Output Options

Parameters:

  • outname (str) – output filename, default is msa filename with _refined suffix

  • format (str) – output MSA file format, default is same as input

  • compressed (bool) – gzip refined MSA output