UniProt Access Functions

class prody.database.uniprot.UniprotRecord(data)

This class provides a wrapper for UniProt data including functions for accessing particular fields and parsing associated PDB entries.

parsePDBs(**kwargs)

Load PDB into memory as AtomGroup instances using parsePDB() and perform selection based on residue ranges given by CATH.

prody.database.uniprot.queryUniprot(id, expand=[], regex=True)

Query Uniprot with id and return a dict containing the raw results. Regular users should use searchUniprot() instead.

Parameters:

expand (list) – entries through which you want to loop dictElements until there aren’t any elements left

prody.database.uniprot.searchUniprot(id)

Search Uniprot with id and return a UniprotRecord containing the results.