Chromatin Dynamics Analysis

This module defines classes and functions to parse and write Hi-C data files, visualize, and perform elastic network analysis on Hi-C data.

Parse/write Hi-C files

Following ProDy functions are for parsing and writing Hi-C files:

• parseHiC() - parse Hi-C data file

• parseHiCStream() - parse Hi-C data stream

• writeMap() - write Hi-C data to text file

Visualize Hi-C data

Following ProDy functions are for visualizing Hi-C data:

• showMap() - show Hi-C contact map

• showDomains() - show Hi-C structural domains

Save/load HiC class

• saveHiC()

• loadHiC()