ProDy 2.5 Series
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2.5.0 (Aug 14, 2024)
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**New Features**:

* InSty module prody/proteins/interactions.py for protein interactions and stability
* WatFinder module prody/proteins/waterbridges.py for analysing water bridges, chains and clusters
* Membrane exANM and exGNM apps
* kmedoid clustering
* Logistic regression for differences between sub-ensembles
* MMTF Parser by @vratins
* Protein-ligand interactions including calcSminaBindingAffinity by @karolamik13
* New support for Interpro Pfam
* New modules for accessing Bioexcel cv19 simulation database (precursor to MDDB)

**Bug Fixes and Improvements**:

* add weights to showProjection and fix colors
* fix catdcd frame selection
* fix showAtomicLines gaps
* update pyproject.toml and setup.py to limit scipy
* fix clustenm saving and loading
* fix adp matrix by @jamesmkrieger
* several fixes related to fetching, parsing and writing pdb and cif files
* limit pyparsing<=3.1.1

**New Contributors**:

* @jyaacoub made their first contribution in https://github.com/prody/ProDy/pull/1750
* @vratins made their first contribution in https://github.com/prody/ProDy/pull/1752

**Full Changelog**: https://github.com/prody/ProDy/compare/v2.4.1...v2.5.0