ProDy 1.8 Series =============================================================================== .. contents:: :local: 1.8.2 (Jun 5, 2016) ------------------------------------------------------------------------------- * :func:`.addCoordset` in :class:`.PDBEnsemble` class, has an additional argument for NMR models. 1.8.1 (May 28, 2016) ------------------------------------------------------------------------------- *Bugfixes* * :func:`.getHits` in :class:`.PDBBlastRecord` class, default overlap threshold changed to 0.7 to match with :func:`.mapOntoChain`. * :func:`.calcModes` in :class:`.RTB` have a bug on number of modes and fixed. * Tab and indentation errors with Python 3.4 are fixed. 1.8 (May 13, 2016) ------------------------------------------------------------------------------- MechStiff ^^^^^^^^^^^^^^^^^^ * Identification of the weakest/strongest elements of the structure architecture provided together with 3D vizualization and statistics analysis. * Determination of the effective spring constant for selected pair of residues - useful for Single Molecule Force Spectroscopy (SMFS, AFM) and Steered Molecular Dynamics simulations. * Evaluating the contributions of each mode to selected deformations **New Features**: *Python 2 and 3 Support* * ProDy has been refactored to support Python 2.7 and 3.4. Windows installers for Python 2.7 and 3.4 are available in :ref:`getprody`. * Unit tests are compatible with Python 2.7 and 3.4, and running them with other versions gives errors due to unavailability of some :mod:`unittest` features. *Bugfixes* * Various indexing issues are fixed. * Compatibility issue of :func:`.searchPfam` with Python 2.7.11 is fixed.