.. _reference:

Reference Manual
================

.. toctree::
   :maxdepth: 1
   :glob:

   atomic/index
   chromatin/index
   compounds/index
   database/index
   domain_decomposition/index
   dynamics/index
   ensemble/index
   kdtree/index
   measure/index
   proteins/index
   sequence/index
   trajectory/index
   utilities/index
   apps/index
   prody