.. _howtocite:

Citing
===============================================================================

When using *ProDy* or *NMWiz* in published work, please cite:

  | Bakan A, Meireles LM, Bahar I.
  | *ProDy*: Protein Dynamics Inferred from Theory and Experiments.
  | *Bioinformatics* **2011** 27(11):1575-1577.

  | Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I.
  | *Evol* and *ProDy* for Bridging Protein Sequence Evolution and Structural Dynamics.
  | *Bioinformatics* **2014** 30(18):2681-2683.

  | Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I.
  | *ProDy* 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python.
  | *Bioinformatics* **2021** 37(20):3657-3659.

When using *pairwise2* or *KDTree* modules in published work, please cite:

  | Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I,
    Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ.
  | Biopython: freely available Python tools for computational molecular
    biology and bioinformatics.
  | *Bioinformatics* **2009** 25(11):1422-3.